miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse :: Contigs




EST name EST sequence
gi|71708459|gb|DR939096.1|DR939096 GGATTAAAATTTAACATCACCATCATCATCATCATCTATCATGACTGCTCAGACTCAAGAAGAGCTCCTCGCTGCTAATC
TCGAACAGCAGAAAATTAATCCTGATGAGCCTGTTGTTGAAGATGAAGAGGATGAAGATGACGATGATGAAGATGATGAT
GACAAGGATGATGATGAGGTTGAAGGACAAGGAGATGGCAGTGGCAGATCTAAGCAGAGCAGAAGTGAGAAAAAGAGTCG
GAAAGCGATGTTGAAACTTGGAATGAAAGCCATCCCTGGAGTTAGCCGTGTGACAGTTAAAAAGAGCAAGAATATTTTAT
TTGTCATCTCGAAGCCAGATGTGTTTAAGAGCCCGACATCTGATACTTATGTCATCTTTGGTGAGGCAAAGATAGAGGAT
TTGAGCTCACAACTGCAGACACAGGCTGCTGAGCAGTTCAAGGCTCCTGATTTAAGCCATGTGATTTCCAAGCCTGAAAC
TTCAGCTATCGCCCAGGATGATGAAGATGTAGATGAGACTGGAGTGGAGCCAAAGGATATTGAGTTAGTTATGACACAGG
CAGGTGTCACAAGATCTAAGGCAGTGAAGGCACTGAAGGCTGCTGAAGGGGATATTGTTACTGCCATCATGGAGCTAACA
AACTAAGAGAATGCTTTTAAGCATTCTTATTGTTAGTTGAGTTTGAGCCGTGTTTCTTAAATATTCATAGACGTATGTTT
CAAGATGGGATCATGCTTATTTCGTGTTGTATCAGTAACAAAATTGATGAAACCTTTTCTGTTAGACACTGGTTCCTAGA
GTTAGTCTGCTATAAAAGTGTGGTTGTCTCAGAATTGATTCACAAAAGTTGTACAGCAGTTAGCATTATCATGTTGGTGC
TGCATTGTGCTCAGATGCATGGAGA




Most similar to sp|Q9M612|NACA_PINTA

>BLASTX 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>sp|Q9M612|NACA_PINTA Nascent polypeptide-associated complex subunit
           alpha-like protein OS=Pinus taeda PE=2 SV=1
          Length = 205

 Score =  220 bits (561), Expect = 9e-57
 Identities = 124/196 (63%), Positives = 140/196 (71%), Gaps = 1/196 (0%)
 Frame = +2

Query: 56  QEELLAANLEQQKINPXXXXXXXXXXXXXXXXXXXXXXXXXXXGQGDGSGXXXXXXXXXX 235
           +EE LAA LEQQ++                             G+  G G          
Sbjct: 11  EEETLAAKLEQQELE--HSDEPILEDDEDDDDEEDDNDEDDAQGEQGGEGKSKQSRSEKK 68

Query: 236 XXXAMLKLGMKAIPGVSRVTVKKSKNILFVISKPDVFKSPTSDTYVIFGEAKIEDLSSQL 415
              AMLKLGMK + GVSRVT+KKSKNILFVIS PDVFKSPTSDTY+ FGEAKIEDLSSQL
Sbjct: 69  CRKAMLKLGMKPVSGVSRVTIKKSKNILFVISNPDVFKSPTSDTYIAFGEAKIEDLSSQL 128

Query: 416 QTQAAEQFKAPDLSHVISKPETSAIAQDDED-VDETGVEPKDIELVMTQAGVTRSKAVKA 592
           QTQAAEQFKAP+LSHV  KPE+S  AQ+DED VD+TGVEPKDIELVMTQAGV+R+KAVKA
Sbjct: 129 QTQAAEQFKAPNLSHVTMKPESSTAAQEDEDEVDDTGVEPKDIELVMTQAGVSRTKAVKA 188

Query: 593 LKAAEGDIVTAIMELT 640
           LKAA+GDIV+AIM+LT
Sbjct: 189 LKAADGDIVSAIMDLT 204